Blog

ARCHER Embedded Computational Science and Engineering projects

Author: Chris Johnson
Posted: 18 Sep 2019 | 16:01

Since the start of the ARCHER UK National Supercomputing Service service, one hundred eCSE (embedded Computational Science and Engineering) projects have been awarded funding to carry out code improvements for software running on ARCHER and future Tier-1 services. Projects have come from a diverse range of disciplines with principal investigators (PIs), Co-Investigators (Co-Is) and technical staff involved from 44 different institutions across the UK.

ARCHER Data Transfer Guide now updated

Author: Caoimhin Laoide-Kemp
Posted: 13 Sep 2019 | 10:39

As ARCHER and the UK Research Data Facility (RDF) are both coming to the end of their service, many users will have to transfer their data to their own machines. Because of this, the ARCHER Data Transfer Guide has been updated to give more precise and up-to-date information about best practices for transferring data between ARCHER, the RDF, and remote machines.

Optimizing CPU oversubscribed reductions

Author: Guest blogger
Posted: 6 Sep 2019 | 11:17

Gladys Utrera was an HPC Europa3 visitor to EPCC from 1st of July to the 3rd of August 2019. She has been an HPC Europa visitor before - in this brief blog article she tells us what she did this time.

Hi! My name is Gladys Utrera and I currently work at the Computer Architecture Department of the Universitat Politècnica de Catalunya in Barcelona, Spain. There I combine teaching of parallel computing and operating systems subjects with research on HPC topics and parallel programming models. Thanks to the HPC-Europa3 programme I could spend four weeks at the EPCC in the University of Edinburgh with my host Mark Bull who is a very well-known expert in my research areas. This is my third research visit to EPCC, and the second as an HPC-Europa visitor. 

My research involves executions on large multi-core node clusters. In addition, performance evaluations on machines with different architectures characteristics like ARCHER and Cirrus, enrich my results greatly. 

Benchmarking MPI implementations on ARM

Author: Nick Brown
Posted: 30 Aug 2019 | 11:32

The recent installation of Fulhame, the ARM HPC machine based here in EPCC as part of the Catalyst UK programme, raises plenty of interesting opportunities for exploring the HPC software ecosystem for ARM. One such aspect is the relative performance of different MPI implementations on these machines and this is what I was talking about last week at the MVAPICH User Group (MUG) workshop.

Wee Archie production

Author: Guest blogger
Posted: 27 Aug 2019 | 16:32

Caelen Feller, a PRACE Summer of HPC(link is external) (SoHPC) student working with Wee Archie, gives us the final status report of his project. You can also read his original post.

ARCHER Image and Video Competition 2019

Author: Clair Barrass
Posted: 21 Aug 2019 | 09:56

We are pleased to announce the ARCHER Image and Video Competition 2019, and we invite all users of the national supercomputing service to share their images and videos on the theme of "ARCHER Enabling Research".

Analysing historical newspapers and books using Apache Spark and Cray Urika-GX

Author: Mike Jackson
Posted: 16 Aug 2019 | 16:25

Library booksIn our October 2018 blog post on Analysing humanities data using Cray Urika-GX, we described how we had been collaborating with Melissa Terras of the College of Arts, Humanities and Social Sciences (CAHSS) at The University of Edinburgh to explore historical newspapers and books using the Alan Turing Institute's deployment of a Cray Urika-GX system ("Urika"). In this blog post we describe additional work we have done, to look at the origins of the term "stranger danger", find reports on the Krakatoa volcanic eruption of 1883, and explore the concept of "female emigration".

Optimising sparse matrix-vector products at EPCC

Author: Guest blogger
Posted: 15 Aug 2019 | 11:35

Edoardo Coronado visited EPCC from 18th May–15th August 2019 under the HPC-Europa3 programme. 

Hi! My name is Edoardo Coronado. I am a Mexican PhD student in Technologies of Information at the "Centro Singular de Investigación en Tecnoloxías Intelixentes" (CiTIUS) at the "Universidad de Santiago de Compostela" in Spain. I work on the optimisation of iterative solvers on accelerator devices. I have spent three months at EPCC at the University of Edinburgh under the HPC-Europa3 transnational access programme with Mr Adrian Jackson acting as my host.

PRACE SoHPC: Wee Archie project overview

Author: Guest blogger
Posted: 12 Aug 2019 | 11:02

Caelen Feller, a PRACE Summer of HPC (SoHPC) student working with Wee Archie, gives us an overview and status report of his project.

As I have said previously, I’m working with Wee ARCHIE, EPCC's mini supercomputer, this summer. Wee Archie is made of 16 Raspberry Pi chips – each very small, lightweight computers connected together to work as a single machine. With each chip is an attached LED panel, allowing me to display what is occurring on the chip and how it is communicating to other chips. I have created a series of tutorials and simple demonstrations to be run on Wee Archie which explain the basics of message passing using MPI to a complete novice in parallel computing and non-expert in computers in general. 

Understanding protein synthesis via analysis of ribosome profiling data

Author: Mike Jackson
Posted: 8 Aug 2019 | 10:51

The molecular structure of a yeast ribosome, composed of 79 proteins

A multi-disciplinary team of biologists, bioinformaticians and research software engineers based at EPCC and The Wallace Lab at University of Edinburgh, The Shah Lab at Rutgers University, and The Lareau Lab at University of California, Berkeley, will enhance and extend a software suite called RiboViz to extract biological insight from "ribosome profiling" data and drive forward understanding of protein synthesis.

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Contact

Tracy Peet
+44 (0) 131 650 5362
t.peet@epcc.ed.ac.uk