Software Carpentry returns to Edinburgh

Author: Mike Jackson
Posted: 11 Dec 2013 | 13:08
On the 3rd of December, Software Carpentry returned to Edinburgh with EPCC hosting a boot camp as part of our involvement in both the PRACE Advanced Training Centre and The Software Sustainability Institute.

We had 34 attendees, half from Edinburgh and Glasgow and half from across the UK, with one attendee from Rutgers University in New Jersey. They included researchers from a wide range of disciplines: physics, engineering, chemistry and life sciences, earth sciences, medicine and space sciences, and humanities and social sciences. About half the attendees were PhD students, while the rest were senior researchers and academics.

During the boot camp we provided a hands-on introduction to version control and Git, scientific programming in Python (the numpy, scipy and matplotlib libraries), good programming practice and testing.


As is traditional on boot camps, we went round the room to see what the attendees thought were the good points and bad points, so delivery can be improved (via a form of iterative development!) in future:
Good points Bad points
Git and revision control (mentioned by 6) Difficult to catch up if one fell behind (mentioned by 3)
Python (mentioned by 4) Too much information in too little time (mentioned by 3)
Seeing how to make code reusable across different data sets A 3rd day would have helped with the above (mentioned by 2)
Mix of material to get a good overview Visual references would have helped with Git
Time spent on practical aspects Hard to see relevance of Git for a solo developer
Sticky green/red notes to say all is fine/request help (mentioned by 2) Could have used bash instead of Python
Multiple projector screens Using a Python IDE would help attendees keep up
Large number of helpers  Python debugging was not covered
Helpful instructors Python was too basic
Timing of breaks Still unclear as how unit testing can help
  Tests only seemed applicable to simple codes
  Thought there would have been more on revision control and unit testing
  A common example running through all sessions would have been useful
My EPCC colleague Mario Antonioletti and I instructed on this boot camp with assistance from fellow EPCCers Amy Krause, Alistair Grant, Arno Proeme, Dominic Sloan-Murphy and David Scott. We were joined by Martin Jones from Edinburgh's School of Biological Sciences.

Next steps

We plan to run boot camps next year as part of our user and computational science and engineering support for ARCHER, the UK's new national HPC service for academic research. For more news on our involvement in Software Carpentry or if you want to get involved as a helper, instructor or organiser, check out the Institute's Software Carpentry web page or get in touch.


Mike Jackson, EPCC

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