Modelling & simulation

Active matter in an active city

Author: Guest blogger
Posted: 9 Jul 2019 | 13:39

Giuseppe Negro undertook an HPC-Europa3 visit based in Edinburgh from 15/04/19–27/05/19. He gives us a brief overview of his visit and the work he undertook.

Hi everyone! My name is Giuseppe Negro and I am a PhD student at the University of Bari in Italy. I work in computational modelling of soft matter systems with Prof. Giuseppe Gonnella and with my collegue Livio Nicola Carenza, who was also an HPC-Europa3 visitor in Edinburgh, at the Department of Physics in Bari. I visited EPCC under the HPC-Europa3 transnational access programme, and I was hosted by Prof. D. Marenduzzo at the Department of Physics and Astronomy of the University of Edinburgh located at the James Clerk Maxwell Building.

Accelerating cloud physics and atmospheric models using GPUs, KNLs and FPGAs

Author: Nick Brown
Posted: 24 Apr 2019 | 11:51

The blog post below is based on the abstract of a talk at the PASC mini-symposium 'Modelling Cloud Physics: Preparing for Exascale' (Zurich, 13 June 2019).

The Met Office NERC Cloud model (MONC) is an atmospheric model used throughout the weather and climate community to study clouds and turbulent flows. This is often coupled with the CASIM microphysics model, which provides the capability to investigate interactions at the millimetre scale and study the formation and development of moisture. One of the main targets of these models is the problem of fog, which is very hard to model due to the high resolution required – for context the main UK weather forecast resolves to 1km, whereas the fog problem requires 1metre or less.

My HPC-Europa visit to EPCC

Author: Guest blogger
Posted: 20 Nov 2018 | 09:08

 

Pablo C. Cañizares came on an HPC-Europa3 visit to EPCC from 23 July–24 October 2018. In this blog article he summarises his visit.

Hi there! I'm Pablo C. Cañizares, a PhD student in Computer Science from the Complutense University of Madrid (UCM), Spain. I work in the Design and Testing of Reliable Systems group in the Computer Science Faculty of the UCM. I visited EPCC for three months under the HPC-Europa3 transnational access programme and was hosted by EPCC's Dr David Henty.

New Prosperity Partnership to develop world first in high-fidelity engineering simulations

Author: Michele Weiland
Posted: 5 Nov 2018 | 14:44

A consortium led by Rolls-Royce and EPCC was recently awarded an EPSRC Prosperity Partnership worth £14.7m to develop the next generation of engineering simulation and modelling techniques, with the aim of developing the world’s first high-fidelity simulation of a complete gas-turbine engine during operation.

HPC Europa3: My visit

Author: Guest blogger
Posted: 7 Aug 2018 | 10:28

Dr Martin Lepšík came on an HPC-Europa3 visit from 16-29 July and was hosted by Dr Emanuele Paci at the University of Leeds. Martin started his visit by coming to Edinburgh.

My name is Martin Lepšík, and I am a Czech computational structural biologist. After 11 years of fruitful research in quantum mechanics-based drug design (at P. Hobza’s group at IOCB, Prague, CR), I decided to enrich my expertise with enhanced-sampling molecular dynamics of lectin-carbohydrate complexes, important for human health and disease.

Arnau Miro: an HPC Europa visitor's report

Author: Guest blogger
Posted: 4 Jul 2018 | 10:22

Arnau Miró was an HPC-Europa visitor from 10th Jan–9th Apr 2018. He was hosted by Dr Charles Moulinec at STFC Daresbury Laboratory.

Hello everyone! My name is Arnau Miró and I am a third-year PhD student from Universitat Politècnica de Catalunya. I’m working in the Aerospace department in collaboration with the Barcelona Supercomputing Center Computer Applications in Science and Engineering department. I visited EPCC under the HPC-Europa3 transnational access programme, although I was mainly hosted by Dr Charles Moulinec at STFC Daresbury Laboratory.

HPC-Europa 3 visit: molecular modelling of galectin binding compounds

Author: Guest blogger
Posted: 12 Apr 2018 | 12:22

Dr Domenica Capasso was our first HPC-Europa3 visitor at EPCC but was hosted remotely at UCL from Nov 2017 to Dec 2017. She relates her experiences and research in this blog article.

I recently spent a month in London funded by the HPC-Europa3 programme and hosted by Prof. Francesco Luigi Gervasio at the Department of Chemistry at UCL. This was an exciting experience for me, primarily for my research work but it also provided me with an opportunity to visit London, a city I had never been to before. I arrived in London with interesting biological results on some potential inhibitors of the galectins class of proteins, which had been synthesized at my Institute in Naples. Galectins (Gal) are β-D-galactoside binding proteins that have important implications for many diseases including tumourigenesis, inflammatory response and autoimmune disorders. The general aim of this work is to rationally design novel inhibitors of galectins that could be used as anti-cancer and anti-inflammatory therapies.

HPC-Europa 3 visit: Optimising the processing of food

Author: Guest blogger
Posted: 11 Apr 2018 | 10:49

Miriam Ruiz Ferrández was a recent HPC-Europa3 visitor to Edinburgh who used EPCC resources while being hosted by Napier University. In this article she relates some of her findings and experiences.

Hi everyone! I am a PhD student at the University of Almería, which is located in the south-east of Spain. I spent three months in Edinburgh funded by the HPC-Europa3 programme working on a project entitled: “A Parallel Multi-Objective Algorithm for Optimizing High-Pressure/Temperature Treatments in the Food Industry”. During this research stay, I was collaborating with Professor Ben Paechter at Edinburgh Napier University and I used computing resources provided by EPCC at the University of Edinburgh.

Art from supercomputing

Author: Nick Brown
Posted: 21 Apr 2017 | 11:55

Last Thursday marked the opening of the FEAT project (Future Emerging Art and Technology) exhibition in Dundee’s LifeSpace art research gallery. The FEAT project is a pilot that focuses on the synergy between art and science, and how art can bring benefits to the scientific process. EPCC is involved through the INTERTWinE project.

For the past 12 months the artists Špela and Miha have been working with us on a piece related to supercomputing. They have spent time at a number of European supercomputing centres and additional FEAT workshops, such as the one in Vienna last summer that I attended and discussed in a previous blog article.

NESS (Next Generation Sound Synthesis project) bows out

Author: Kostas Kavoussanakis
Posted: 12 Apr 2017 | 16:14

The Next Generation Sound Synthesis project (NESS) has concluded its five-year journey. With true inter-disciplinary focus, genuine user-engagement and over 75 publications overall, the project has been a great success for the University of Edinburgh, and for EPCC in particular.

Pages