Posted: 8 Jun 2015 | 17:48
Intel Parallel Computing Center collaboration with Colfax
We're just kicking off a week's collaboration with Colfax, a US technology company that collaborates heavily with Intel on Xeon Phi optimisation and training for the Xeon Phi.
Posted: 8 Jun 2015 | 16:41
Over 18 months ago, we kicked off the ExTASY project. Our lofty aim was to tackle one of the 'Grand Challenges' of biochemistry - effective sampling of complex biomolecules using Molecular Dynamics to provide a physical understanding of their function and behaviour.
Posted: 8 Jun 2015 | 10:03
I had not intended to go to the Mozilla Global Science Sprint 2015. However, EPCC acted as a hub for local developers who wanted to participate and Neil Chue Hong (Director of the Software Sustainability Institute, and based here at EPCC) asked me to set up the room and make the initial connection in case he was unavailable. I managed to set up the servers and then stayed.
So what is the Mozilla Global Science Sprint?
Posted: 30 May 2015 | 14:17
The PERICLES project has been running for just over two years now. Its goal is a lofty one - to ensure that today's digital data and art can be preserved for use in the future. Sounds dead easy, no?
Posted: 25 May 2015 | 11:52
Posted: 2 Mar 2015 | 09:33
The PRACE Summer of HPC (SoHPC) offers university students the opportunity to spend two months at a European HPC centre working on a topical summer project.
Having hosted students during the 2013 and 2014 programmes, we at EPCC are excited to be once again involved and will host three students this summer, one per project that we have proposed.
Posted: 24 Feb 2015 | 12:05
The European Exascale Software Initiative is a consortium of 29 organisations and around 100 individuals who are working towards providing key recommendations on European policy with a particular focus on how software can be developed and techniques further improved to help meet the challenges that exascale computing might bring.
The first version of this project, EESI-1, highlighted a number of key areas for further investigation and consideration. The EESI-2 project, which has been running since 2013, has built upon this and focused its attention on these areas.
Free pizza, prizes and research software best practice: Collaborations Workshop 2015... Registration open!Author: Mike Jackson
Posted: 13 Feb 2015 | 12:45
CW15 focuses on software, best practice and the social side of working past the boundaries of traditional disciplines and roles to accelerate research outcomes. Or, put differently, interdisciplinarity done right!
Posted: 27 Jan 2015 | 22:16
I have been re-architecting the solver-side of VOX-FE, a voxel-based finite element bone modelling suite developed by Prof. Michael Fagan's Medical & Biological Engineering group at the University of Hull. The suite comprises a GUI (you can read more about it in this blog post) and a linear solver. VOX-FE creates bone models made up of small cuboid elements by directly converting Computed Tomographic data into these elements. This circumvents the problems faced by the more common method of model creation via mesh interpolation (loss of detail, scaling issues). VOX-FE's approach makes modelling an entire skull with surrounding soft tissue a realisable goal. However, it’s not quite there yet.
Posted: 25 Jan 2015 | 15:55
For the last few years, I have had the opportunity to collaborate with Prof. Michael Fagan of the Medical and Biological Engineering group at the University of Hull on the development of his VOX-FE voxel finite-element (FE) bone modelling software. Past projects under EPSRC and HECToR dCSE funding allowed us to improve the scaling of the core solver and implementent parallel I/O, but it has become increasingly apparently that this was papering over the cracks, and a complete re-engineering of the code base would be required to make it portable, scalable and flexible enough to be useable.