HPC-Europa

Workshop review: 'Reducing Barriers to HPC Adoption for SMEs'

Author: William Lucas
Posted: 25 Nov 2019 | 12:45

On 14 November 2019, EPCC hosted the workshop ‘Reducing Barriers to HPC Adoption for SMEs’. Held in the University of Edinburgh’s Bayes Centre, the one-day meeting’s aim was to increase awareness of the benefits of high-performance computing (HPC) use among European small and medium-sized enterprises (SMEs), in particular of the gateway offered to them through the HPC-Europa3 programme. In total twenty-six representatives from ten SMEs and three HPC-Europa3 centres attended.

Integrating 3D remeshing in the iceberg-calving model of Elmer/Ice at St Andrews

Author: Guest blogger
Posted: 19 Nov 2019 | 17:10

Eef van Dongen visited the University of St Andrews from 23 September–11 October 2019 through the HPC-Europa3 transnational access programme. In this post she describes her work on improving iceberg-calving simulation techniques.

Hi! My name is Eef van Dongen. I am a PhD student in glaciology at ETH Zurich. This autumn I visited Dr Joe Todd in the research group of Professor Doug Benn based at the University of St Andrews for three weeks with HPC-Europa3. My research focuses on iceberg-calving – the breaking off of icebergs at the edge of glaciers into the sea – which is responsible for approximately half of the ice mass loss of the Greenland ice sheet.

Modelling chemical reactions in (explicit) solvents

Author: Guest blogger
Posted: 18 Nov 2019 | 16:02

Arthur’s Seat in Edinburgh. St Andrews should be straight ahead.

Arthur’s Seat in Edinburgh. St Andrews should be straight ahead.

Nicolas Sieffert was an HPC-Europa3 visitor to the University of St Andrews in summer 2018 and again in 2019. In this blog post he describes his two trips to Scotland.

Hi there! I am Nicolas Sieffert, associate professor in computational chemistry at the University Grenoble Alpes (France). I visited the UK for nine weeks under the HPC-Europa3 transnational access programme and was hosted by Prof. M. Bühl at the University of St Andrews (UK), with HPC resources and technical assistance provided by EPCC.

Event: Reducing barriers to HPC adoption for SMEs

Author: Gavin Pringle
Posted: 4 Nov 2019 | 15:07

14 November, Bayes Centre, Edinburgh

Here at EPCC we are gearing up for the HPC-Europa3 workshop for SMEs. This event will explain the funding available to support visits by EU experts in high performance computing to Scottish/UK SMEs (and vice versa), and also for access to major computing resources for large-scale simulations and/or data analytics.

Exploring the binding mechanism of glycomimetics to galectins through simulations

Author: Guest blogger
Posted: 21 Oct 2019 | 11:13

Domenica Capasso was an HPC-Europa visitor to University College London from 12 June to 11 August 2019. In this blog article she describes her work and time in London.

In June this year, I returned to London and I spent two months at the Department of Chemistry at UCL, funded by HPC-Europa and hosted by Professor Francesco Luigi Gervasio. My project concerns the galectins, β-D-galactoside binding proteins with important implications for tumorigenesis, inflammatory response and autoimmune disorders. During my first visit, we created a virtual library of candidate compounds, containing two saccharide residues with a bridging sulphur/selenium atom. These derivatives, targeting galectins, were obtained using structure-based drug design approaches and are synthesised and tested in my Institute in Naples.

Optimizing CPU oversubscribed reductions

Author: Guest blogger
Posted: 6 Sep 2019 | 11:17

Gladys Utrera was an HPC Europa3 visitor to EPCC from 1st of July to the 3rd of August 2019. She has been an HPC Europa visitor before - in this brief blog article she tells us what she did this time.

Hi! My name is Gladys Utrera and I currently work at the Computer Architecture Department of the Universitat Politècnica de Catalunya in Barcelona, Spain. There I combine teaching of parallel computing and operating systems subjects with research on HPC topics and parallel programming models. Thanks to the HPC-Europa3 programme I could spend four weeks at the EPCC in the University of Edinburgh with my host Mark Bull who is a very well-known expert in my research areas. This is my third research visit to EPCC, and the second as an HPC-Europa visitor. 

My research involves executions on large multi-core node clusters. In addition, performance evaluations on machines with different architectures characteristics like ARCHER and Cirrus, enrich my results greatly. 

Optimising sparse matrix-vector products at EPCC

Author: Guest blogger
Posted: 15 Aug 2019 | 11:35

Edoardo Coronado visited EPCC from 18th May–15th August 2019 under the HPC-Europa3 programme. 

Hi! My name is Edoardo Coronado. I am a Mexican PhD student in Technologies of Information at the "Centro Singular de Investigación en Tecnoloxías Intelixentes" (CiTIUS) at the "Universidad de Santiago de Compostela" in Spain. I work on the optimisation of iterative solvers on accelerator devices. I have spent three months at EPCC at the University of Edinburgh under the HPC-Europa3 transnational access programme with Mr Adrian Jackson acting as my host.

My HPC-Europa visit to Cambridge

Author: Guest blogger
Posted: 29 Jul 2019 | 16:27

Hi! My name is Concetta Cozza. I am a PhD student in Life Science at University ‘Magna Graecia’ of Catanzaro. This summer I visited the research group of Professor Michele Vendruscolo based at the University of Cambridge for three months with the HPC-Europa3 transnational access programme.

Computational optimisation of materials at St Andrews

Author: Guest blogger
Posted: 22 Jul 2019 | 11:53

EPCC staff supported Dr Rincon Bonilla in his HPC-Europa3 research visit to the University of St Andrews earlier this year. 

My name is Mauricio Rincon Bonilla. I work as a postdoctoral fellow at the Basque Centre for Applied Mathematics in Bilbao, Spain, where I combine advanced sampling methods with physico-chemical insights to investigate ion dynamics in advanced battery materials. With the sponsorship of an HPC-Europa3 grant, I was able to spend seven weeks at the University of St Andrews with my hosts Prof. Tanja van Mourik and Herbert Fruchtl, who have lots of expertise in density functional theory for biological and inorganic materials. 

Evaluation of a phase diagram with a novel technique in an HPC-Europa3 funded collaboration

Author: Guest blogger
Posted: 19 Jul 2019 | 09:22

György Hantal was an HPC-Europa3 visitor from 18th March to 17th May 2019.

I am György Hantal (pictured here with Durham castle in the background), a postdoctoral researcher from the University of Vienna. I was an HPC-Europa3 visitor for two months, hosted by Dr. Lívia Bartók-Pártay at the University of Reading's Department of Chemistry and supported by EPCC in Edinburgh.

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