Modelling & simulation

CompBioMed: creating virtual humans

Author: Gavin Pringle
Posted: 22 Jul 2021 | 14:09

EPCC is a Core Partner of CompBioMed, a European Centre of Excellence focused on the use and development of computational methods for biomedical applications. We prepare these applications for future exascale systems, to create the first virtual humans: digital twins to enable personalised medicine.

EPCC hosts its first GPU hackathon

Author: Larisa Stoltzfus
Posted: 11 May 2021 | 10:36

EPCC held its first GPU hackathon this April in partnership with NVIDIA, hosting 28 participants and 20 mentors across seven teams. The event was held virtually due to the ongoing Covid-19 pandemic. Using Zoom and Slack, individual teams were able to work alongside mentors in separate breakout rooms and channels.

Better engineering through HPC

Author: Mark Sawyer
Posted: 5 May 2021 | 10:21

EPCC is a partner in the EXCELLERAT project, a single point of access for expertise on how data management, data analytics, visualisation, simulation-driven design and Co-design with high-performance computing (HPC) can benefit engineering, especially in the aeronautics, automotive, energy and manufacturing sectors.

Novel ammonia-hydrogen sulphide mixtures under extreme conditions: Implications for Ice-giant planets

Author: Guest blogger
Posted: 12 Feb 2021 | 13:14

Sudip Kumar Mondal from Jadavpur University in Kolkata visited the University of Edinburgh through the HPC-Europa3 Transnational Access programme. Falling from 11 October to 29 January, Sudip's visit was unlike most others because the Covid pandemic was ongoing. In this blog post Sudip describes his experiences in coming to and working in Edinburgh.

My doctoral research focuses on the physical behaviour of naturally occurring mineral phases at high temperature and pressure conditions by employing quantum chemical simulations which are hard to realize through experiments at the laboratory. Dr Andreas Hermann, my supervisor at the University of Edinburgh, was undoubtedly perfect for supervising this project, being an expert on materials at extreme conditions.

Modelling triple stellar interactions during a pandemic

Author: Guest blogger
Posted: 8 Dec 2020 | 10:46

Alexey Bobrick (Lund UniversitySpirit of 2020. My host and me, on one of the top floors in Birmingham University.(link is external), Sweden) was an HPC-Europa3 visitor hosted by Dr Silvia Toonen (link is external)at the Institute of Gravitational Wave Astronomy(link is external), University of Birmingham, UK. Because of COVID-19 restrictions, Alexey's visit has been split between his time in Birmingham (from 1–23 November), and working remotely from Sweden until 23 December. In this post Alexey tells us about his trip to Birmingham.

I study binary stellar astrophysics at Lund University, Sweden. In Birmingham my host, Dr Silvia Toonen, is one of the leading experts in triple and binary stellar evolution. I arrived at my accommodation in the middle of the autumnal Edgbaston Park area next to Birmingham University, and next morning I met my host. She kindly showed me around the campus and introduced me to her colleagues. The image shows me and my host, on one of the top floors in Birmingham University.  We then launched into many science discussions, which continued in the following weeks, together with meetings, work, calculations and more discussions.

UrgentHPC20 workshop at SC: Fighting disasters with urgent computing

Author: Nick Brown
Posted: 10 Nov 2020 | 09:44

Join the workshop: Friday 13 November, 2:30pm–6:30pm ET

At SC20 this year we are chairing UrgentHPC, the second international workshop on the use of HPC for urgent decision making. The idea of the workshop is to explore the fusion of HPC, big data, and other technologies in responding to disasters such as global pandemics, wildfires, hurricanes, extreme flooding, earthquakes, tsunamis, winter weather conditions, and accidents. Whilst HPC has a long history of simulating disasters, we believe that technological advances are creating exciting new opportunities to support emergency, urgent, decision making in real-time.

Urgent computing: presentations at SC20

Author: Rupert Nash
Posted: 28 Oct 2020 | 14:27

 

EPCC leads a work package of the VESTEC (Visual Exploration and Sampling Toolkit for Extreme Computing) project, which seeks to fuse HPC and real-time data for urgent decision-making for disaster response. Our work has resulted in two accepted papers into SC20 workshops: one around our custom workflow execution system, and another on extending the Common Workflow Language standard to better support parallel application execution.

On-demand computing and data solutions for industry at EPCC

Author: Thomas Blyth
Posted: 27 Aug 2020 | 13:54

Cirrus is a Tier-2 state-of-the-art advanced computing facility available to industry and academia. Hosted and managed by EPCC, it provides an ideal platform for solving computational, simulation, modelling, and data science challenges. 

The system was recently upgraded via a £3.5m funding award from the UK's Engineering and Physical Sciences Research Council. This included the addition of 144 NVIDIA V100 GPUs and a 256TB high-performance storage layer for the most demanding data-streaming applications. 

Optimising sparse-matrix vector multiplication on Intel Xeon Gold processors

Author: Guest blogger
Posted: 24 Aug 2020 | 18:11

Edoardo Coronado visited EPCC from 18th May–15th August 2019 under the HPC-Europa3(link is external) programme. Here he gives us an update on his research since his previous blog article.

During my visit to EPCC in 2019 under the auspices of the HPC-Europa3 programme, I worked on optimising routines to perform the Sparse Matrix-Vector (SpMV) product, a common operation in lots of scientific applications, on Intel Xeon Gold processors and Graphics Processing Units (GPUs).

VESTEC Project Poster at ISC 2020 digital conference

Author: Nick Brown
Posted: 23 Jun 2020 | 15:10

This week ISC, one of the largest conferences in the supercomputing calendar, should have been running in Frankfurt. It’s a funny feeling because, as I type, I realise that if it wasn’t for COVID-19 then, instead of being stuck at home, I would have been busy navigating the Messe Frankfurt, going from one session to another.

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