HPC

Bootstrapping with R and SPRINT

Author: Terry Sloan
Posted: 24 Feb 2014 | 12:10

EPCC and the Division of Pathway Medicine at the University of Edinburgh have made public the report from their recent study into the performance of bootstrapping within their SPRINT R software package.

1st Annual CP2K UK users' meeting

Author: Iain Bethune
Posted: 6 Feb 2014 | 09:50

Last week we held the first in a series of annual meetings for the CP2K user community at the University of London Garden Halls.

I blogged about it in the run-up to the meeting, but as with any first until you're there you don't know quite what to expect. I was very pleased to see over 50 attendees on the day, ranging from new PhD students to professors, and expert CP2K users to complete novices.

ARCHER: the next national HPC service for academic research

Author: Andy Turner
Posted: 29 Nov 2013 | 11:00

ARCHER (Advanced Research Computing High End Resource) is the next national HPC service for academic research. The service comprises a number of components: accommodation provided by the University of Edinburgh; hardware by Cray; systems support by EPCC and Daresbury Laboratory; and user and computational science and engineering support by EPCC.

EPCC hosts three supercomputers in the world's top 50!

Author: David Henty
Posted: 21 Nov 2013 | 09:31

The most recent top500 list has just been released at SC13 in Denver, and I'm pleased to say that 3 EPCC-hosted systems appear in the top 50:

CP2K user meeting: overcoming the 'complexity hump'

Author: Iain Bethune
Posted: 18 Nov 2013 | 10:20

For the last five years, I've been involved in the development of the CP2K materials science code, mostly in terms of improving its performance and scalability and porting to new systems. During that time a great deal of new functionality has been added, as well as additional input file options, libraries and autotuning capability to enable maximum performance on any given architecture. However, these improvements have come at the cost of increased complexity - and CP2K already has a fearsome reputation among researchers for being very hard to use!

Project ExTASY: solving the sampling problem

Author: Iain Bethune
Posted: 15 Oct 2013 | 12:18

Alongside APES, EPCC plays an important role in another project jointly funded by EPSRC and the US National Science Foundation to overcome one of the "Grand Challenges in the Chemical Sciences".

Free Energy Landscape of Alanine-12

Fortissimo! Digital simulation and modelling for European industry

Author: Mark Parsons
Posted: 10 Oct 2013 | 10:27

I am very pleased to announce the start of Fortissimo, a 3-year project led by EPCC that will focus on the development of a Cloud of HPC resources for use, initially, by European manufacturing companies, particularly small and medium-sized enterprises (SMEs).

GPGPU hardware for Numerical Simulations

Author: Adrian Jackson
Posted: 9 Oct 2013 | 11:47

The NAIS project (Numerical Algorithms and Intellegent Software), which EPCC is a member of, has recently purchased 8 NVidia K20 GPGPUs, and associated computer nodes to house them, for use by NAIS members and researchers.

A Day at Our Dynamic Earth

Author: Alistair Grant
Posted: 5 Oct 2013 | 12:01

Image of Audience Group at ODE

In September, Our Dynamic Earth held a two-day event called 'Meet the Experts' for groups of secondary school pupils. EPCC was invited to attend, with Iain Bethune and myself volunteering to give short talks on what supercomputing is and why it is needed. 

Virtual Palaeontology: the debut!

Author: Nick Brown
Posted: 16 Sep 2013 | 12:56

This summer we were fortunate to have a student, Antoine, work on our dinosaur-racing outreach project as part of the Summer of HPC programme. Antoine did a great job in turning the demo from a simple prototype into a much more polished, usable showcase for how HPC plays a vital role in a variety of sciences. If you are a regular reader of the EPCC blog then you might have already read some posts about this application - see my initial blog post, and Antoine's progress updates here and here.

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