Neelofer Banglawala's blog

SoHPC meets FFEA at EPCC

Author: Neelofer Banglawala
Posted: 5 Oct 2015 | 12:24

Since 2013, EPCC has hosted PRACE Summer of HPC (SoHPC) students for eight weeks from early July. I was involved with SoHPC for the first time this year as mentor of two Masters students, Jana Boltersdorf from FH Aachen University of Applied Sciences (Germany) and Ondřej Vysocký from Brno University of Technology (Czech Republic).

Them bones, them bones: finite element bone-modelling

Author: Neelofer Banglawala
Posted: 27 Jan 2015 | 22:16

Macaque cranium
with muscle

I have been re-architecting the solver-side of VOX-FE, a voxel-based finite element bone modelling suite developed by Prof. Michael Fagan's Medical & Biological Engineering group at the University of Hull. The suite comprises a GUI (you can read more about it in this blog post) and a linear solver. VOX-FE creates bone models made up of small cuboid elements by directly converting Computed Tomographic data into these elements. This circumvents the problems faced by the more common method of model creation via mesh interpolation (loss of detail, scaling issues). VOX-FE's approach makes modelling an entire skull with surrounding soft tissue a realisable goal. However, it’s not quite there yet.