Blog

ARCHER Image and Video Competition 2019

Author: Clair Barrass
Posted: 21 Aug 2019 | 09:56

We are pleased to announce the ARCHER Image and Video Competition 2019, and we invite all users of the national supercomputing service to share their images and videos on the theme of "ARCHER Enabling Research".

Analysing historical newspapers and books using Apache Spark and Cray Urika-GX

Author: Mike Jackson
Posted: 16 Aug 2019 | 16:25

Library booksIn our October 2018 blog post on Analysing humanities data using Cray Urika-GX, we described how we had been collaborating with Melissa Terras of the College of Arts, Humanities and Social Sciences (CAHSS) at The University of Edinburgh to explore historical newspapers and books using the Alan Turing Institute's deployment of a Cray Urika-GX system ("Urika"). In this blog post we describe additional work we have done, to look at the origins of the term "stranger danger", find reports on the Krakatoa volcanic eruption of 1883, and explore the concept of "female emigration".

Optimising sparse matrix-vector products at EPCC

Author: Guest blogger
Posted: 15 Aug 2019 | 11:35

Edoardo Coronado visited EPCC from 18th May–15th August 2019 under the HPC-Europa3 programme. 

Hi! My name is Edoardo Coronado. I am a Mexican PhD student in Technologies of Information at the "Centro Singular de Investigación en Tecnoloxías Intelixentes" (CiTIUS) at the "Universidad de Santiago de Compostela" in Spain. I work on the optimisation of iterative solvers on accelerator devices. I have spent three months at EPCC at the University of Edinburgh under the HPC-Europa3 transnational access programme with Mr Adrian Jackson acting as my host.

PRACE SoHPC: Wee Archie project overview

Author: Guest blogger
Posted: 12 Aug 2019 | 11:02

Caelen Feller, a PRACE Summer of HPC (SoHPC) student working with Wee Archie, gives us an overview and status report of his project.

As I have said previously, I’m working with Wee ARCHIE, EPCC's mini supercomputer, this summer. Wee Archie is made of 16 Raspberry Pi chips – each very small, lightweight computers connected together to work as a single machine. With each chip is an attached LED panel, allowing me to display what is occurring on the chip and how it is communicating to other chips. I have created a series of tutorials and simple demonstrations to be run on Wee Archie which explain the basics of message passing using MPI to a complete novice in parallel computing and non-expert in computers in general. 

Understanding protein synthesis via analysis of ribosome profiling data

Author: Mike Jackson
Posted: 8 Aug 2019 | 10:51

The molecular structure of a yeast ribosome, composed of 79 proteins

A multi-disciplinary team of biologists, bioinformaticians and research software engineers based at EPCC and The Wallace Lab at University of Edinburgh, The Shah Lab at Rutgers University, and The Lareau Lab at University of California, Berkeley, will enhance and extend a software suite called RiboViz to extract biological insight from "ribosome profiling" data and drive forward understanding of protein synthesis.

ARCHER Training report Summer 2019

Author: Clair Barrass
Posted: 7 Aug 2019 | 15:59

ARCHER Training report Summer 2019

So, it's been another busy end to the academic year and summer training season for the ARCHER Training team.

Since June we have managed to cram in no less than twelve training courses, in locations from London to Leeds, and Oxford to EPCC here in Edinburgh.

My HPC-Europa visit to Cambridge

Author: Guest blogger
Posted: 29 Jul 2019 | 16:27

Hi! My name is Concetta Cozza. I am a PhD student in Life Science at University ‘Magna Graecia’ of Catanzaro. This summer I visited the research group of Professor Michele Vendruscolo based at the University of Cambridge for three months with the HPC-Europa3 transnational access programme.

PRACE Summer of HPC 2019

Author: Mario Antonioletti
Posted: 29 Jul 2019 | 14:55

PRACE Summer of HPC (SoHPC) offers summer placements at HPC centres across Europe to late-stage undergraduates and/or Masters students. Up to twenty top applicants from across Europe spend two months working on projects related to PRACE technical or industrial work. Here are the three SoHPC visitors who are collaborating on projects with EPCC staff. 

Computational optimisation of materials at St Andrews

Author: Guest blogger
Posted: 22 Jul 2019 | 11:53

EPCC staff supported Dr Rincon Bonilla in his HPC-Europa3 research visit to the University of St Andrews earlier this year. 

My name is Mauricio Rincon Bonilla. I work as a postdoctoral fellow at the Basque Centre for Applied Mathematics in Bilbao, Spain, where I combine advanced sampling methods with physico-chemical insights to investigate ion dynamics in advanced battery materials. With the sponsorship of an HPC-Europa3 grant, I was able to spend seven weeks at the University of St Andrews with my hosts Prof. Tanja van Mourik and Herbert Fruchtl, who have lots of expertise in density functional theory for biological and inorganic materials. 

Software Carpentry at York

Author: Juan Rodriguez Herrera
Posted: 22 Jul 2019 | 11:14

Last month a Software Carpentry workshop organised by EPCC in collaboration with ARCHER and the Software Sustainability Institute was held in York. We had around twenty attendees from various backgrounds such as genetics, physical sciences, and engineering among others. My EPCC colleague Mario joined me as my fellow instructor and we also had the valuable support of three knowledgeable helpers from the Department of Physics at the University of York: Phil Hasnip, Peter Hill, and Killian Murphy.

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Contact

Tracy Peet
+44 (0) 131 650 5362
t.peet@epcc.ed.ac.uk